- 追加された行はこの色です。
- 削除された行はこの色です。
netcdfをLinuxにインストールする．
netcdf-4.2.xより，CとFORTRANでファイルがわかれた．
netcdf-4.2.xより，CとFORTRANでパッケージが分離された．
* 前提条件 [#x4e7cbe3]
- Compiler
-- Intel composer (C and Fortan)
- 各種libraryがインストール済み
-- zlib, szip, jpeg, hdf5
** Compiler [#xa0fe86a]
- GNU C, gfortran
- Intel composer (C and Fortran)
- PGI
** 各種libraryがインストール済み [#nb3bd9b6]
*** 必要なlibrary [#f7a0c2bb]
- zlib
-- http://www.zlib.net/
- szip
-- https://www.hdfgroup.org/doc_resource/SZIP/
- jpeglib
-- http://www.ijg.org/
- hdf5
-- https://www.hdfgroup.org/HDF5/
*** 手順 [#h078e09a]
- 基本 ./configure make, make test, make install
- path
-- PATH, LD_LIBRARY_PATH, C_INCLUDE_PATH
* インストール [#i15d19bb]
** C [#p52d842c]
- 環境設定
// export HDFROOT="/usr/local/hdf5-1.8.9"
// export LD_LIBRARY_PATH="${HDFROOT}/lib:${LD_LIBRARY_PATH}"
// export LDFLAGS="-L${HDFROOT}/lib -I${HDFROOT}/include"
// export OPTIM="-O3 -xAVX -fma -mcmodel=large"
export CC=icc
export CXX=icpc
** C [#m10b1974]
*** Download [#v56bf06f]
- 4.7.3
- https://www.unidata.ucar.edu/downloads/netcdf/
- https://github.com/Unidata/netcdf-c
*** 環境設定 [#s6268dba]
- GNU
export FORT=gfortran
export FC=gfortran
export CC=gcc
export CPP=
export CXX=
- Intel
export FORT=ifort
export FC=ifort
export F77=ifort
export F90=ifort
// export CFLAGS=" ${OPTIM}"
// export CXXFLAGS=" ${OPTIM}"
// export FCFLAGS=" ${OPTIM}"
// export F77FLAGS=" ${OPTIM}"
// export F90FLAGS=" ${OPTIM}"
// export CPP='icc -E -mcmodel=large'
// export CXXCPP='icpc -E -mcmodel=large'
// export CPPFLAGS="-DNDEBUG -DpgiFortran ${LDFLAGS}"
- 設定
./configure --prefix=/opt/netcdf4-ifort \
--disable-shared --enable-netcdf-4 --enable-dap
export CC=icc
export CPP=
export CXX=icpc
- PGI
export FORT=pgf77
export FC=pgf90
export F90=pgf90
export CC=pgcc
export CPP=
export CXX=
*** Compile and install [#i5de203d]
- configure
./configure --prefix=/opt/netcdf4-c --disable-shared --enable-netcdf-4
- コンパイル
make
make check
make install
-- make, make check, make install
//- hdf5関係のErrorが出たら
//-- hdf5のlib, include
//--- /usr/local/lib, /usr/local/includeにコピー
** FORTRAN [#hbe26233]
- version
-- 4.4はコンパイルできなかった. 4.2については以下のとおり
- 環境設定
export LDFLAGS="-lnetcdf -L/opt/netcdf4-ifort/lib -I/opt/netcdf4-ifort/include"
export OPTIM="-O3 -xAVX -fma -mcmodel=large"
export CC=icc
export CXX=icpc
*** Download [#q39ac366]
- 4.5.0
-- CentOS6.2: 4.5.3のコンパイルは失敗
- https://www.unidata.ucar.edu/downloads/netcdf/
- https://github.com/Unidata/netcdf-fortran
*** 環境設定 [#g2ec90a5]
# export LDFLAGS="-lnetcdf -L/opt/netcdf4-c_XXX/lib -I/opt/netcdf4-c_XXX/include"
- 共通
GNU
export CPPFLAGS=-I/opt/netcdf4-c_gnu/include
export FDFLAGS=-L/opt/netcdf4-c_gnu/lib
PGI
export CPPFLAGS=-I/opt/netcdf4-c_pgi/include
export FDFLAGS=-L/opt/netcdf4-c_pgi/lib
- GNU
export FORT=gfortran
export FC=gfortran
export CC=gcc
export CPP=
export CXX=
- Intel
export FORT=ifort
export FC=ifort
export F77=ifort
export F90=ifort
export CFLAGS=" ${OPTIM} ${LDFLAGS}"
export CXXFLAGS=" ${OPTIM}"
export FCFLAGS=" ${OPTIM}"
export F77FLAGS=" ${OPTIM}"
export F90FLAGS=" ${OPTIM}"
export CPP='icc -E -mcmodel=large'
export CXXCPP='icpc -E -mcmodel=large'
export CPPFLAGS="-DNDEBUG -DpgiFortran ${LDFLAGS}"
- 設定
./configure --prefix=/opt/netcdf4-ifort --disable-shared
export CC=icc
export CPP=
export CXX=icpc
- PGI
*** Compile and install [#w00240bb]
- configure
./configure --prefix=/opt/netcdf4-fortran_gnu --disable-shared
./configure --prefix=/opt/netcdf4-fortran_intel --disable-shared
./configure --prefix=/opt/netcdf4-fortran_pgi --disable-shared
- コンパイル
make
make check
make install
* インストール後の環境設定 [#m61ce1c2]
- GNU
export NETCDF=/opt/netcdf4-c_gnu
export NETCDF_F_ROOT=/opt/netcdf4-fortran_gnu
- Intel
export NETCDF=/opt/netcdf4-c_intel
export NETCDF_F_ROOT=/opt/netcdf4-fortran_intel
- PGI
export NETCDF=/opt/netcdf4-c_gnu
export NETCDF_F_ROOT=/opt/netcdf4-fortran_pgi
- 共通
export NCHOME="${NETCDF}"
export NETCDFHOME="${NETCDF}"
export NETCDFROOT="${NETCDF}"
export PATH="${NETCDF}/bin:${PATH}"
export LD_LIBRARY_PATH="${NETCDF}/lib:${LD_LIBRARY_PATH}"
---------------------------------------------------
アーカイブ
---------------------------------------------------
* netcdf-3.6.X [#wd5a43fd]
** netcdf with Intel Fortran 10.0 for Linux [#d374a2a1]
+ netcdf-3.6.Xをダウンロ−ドして展開．コンパイル×(libstdc+xx)
+ netcdf-3.6.Xをダウンロ−ドして展開．
+ 以下の環境を設定し，
setenv FC ifort
setenv FC90 ifort
setenv CC icc
setenv CXX icpc
setenv FFLAGS "-g -O2 -mp -recursive"
setenv CFLAGS "-g -O"
setenv CXXFLAGS "-g"
setenv CPPFLAGS "-DpgiFortran"
-- ./configure --prefix=/usr/local/netcdf-ifort_10.0
-- make check
-- mkdir /usr/local/netcdf-ifort
-- make install
- インストール後の環境設定
setenv NETCDF /usr/local/netcdf-ifort
setenv NCHOME $NETCDF
setenv NETCDFHOME $NETCDF
setenv NETCDF_LIBDIR $NETCDF/lib
setenv NETCDF_INCDIR $NETCDF/include
setenv PATH $NETCDF/bin:"$PATH"
setenv LD_LIBRARY_PATH $NETCDF/lib:"$LD_LIBRARY_PATH"
* Archive [#c3a71931]
- [[netcdf/netcdf with Intel Fortran for Linux - 9.0]]
- [[netcdf/netcdf with Intel Fortran for Linux - 8.0]]
- [[netcdf/netcdf with Intel Fortran for Linux - 7.0]]
* Link [#v2a17385]
- [[参考:http://www.unidata.ucar.edu/software/netcdf/docs/other-builds.html#pg6]]
- http://blog.livedoor.jp/rootan2007/archives/51847001.html
- http://blog.livedoor.jp/rootan2007/archives/51847527.html
- https://sites.google.com/site/airseaairsea/ji-suan-ji-huan-jing/netcdf
